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The coral core microbiome identifies rare bacterial taxa as ubiquitous endosymbionts. Nature 528(7582):364–369.Īinsworth TD, Krause L, Bridge T, Torda G, Raina J-B, Zakrzewski M, Gates RD, Padilla-Gamiño JL, Spalding HL, Smith C, et al.2015. Functional overlap of the Arabidopsis leaf and root microbiota. PeerJ 3:e1029.īai Y, Müller DB, Srinivas G, Garrido-Oter R, Potthoff E, Rott M, Dombrowski N, Münch PC, Spaepen S, Remus-Emsermann M, et al.2015. Compact graphical representation of phylogenetic data and metadata with GraPhlAn. 2(11):e000093.Īsnicar F, Weingart G, Tickle TL, Huttenhower C, Segata N. Microreact: visualizing and sharing data for genomic epidemiology and phylogeography. Multiple data sets can be integrated and a variable can be mapped to visual characteristics to visualize another type of data (CDE), such as using taxon information to color silhouette images ( D).Īrgimón S, Abudahab K, Goater RJE, Fedosejev A, Bhai J, Glasner C, Feil EJ, Holden MTG, Yeats CA, Grundmann H, et al.2016. The ggtreeExtra package supports both rectangular and circular layouts and allows transformation between different layouts ( C). ( A) The overall design of the ggtreeExtra package ( B) comparison of visualization methods for tree annotation (i.e., tree and data graphic alignment) supported by ggtreeExtra and other tools ( C) visualizing associated data (e.g., distribution of species abundance as boxplot) with a phylogenetic tree side by side or on the external ring (inset on the left) ( D) using subplots and images as insets on a phylogenetic tree to present taxon-specific structural feature and summary statistics ( E) illustration of representing multidimensional data sets on an inward circular phylogenetic tree with chord diagram incorporated to display inter-relationships. The design and features of the ggtreeExtra package.
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